BtaALTD0005990-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000038496 | CR2
Description
Bos taurus complement component (3d/Epstein Barr virus) receptor 2 (CR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001198991]
Coordinates
chr16:5298960-5302725:+
Coord C1 exon
chr16:5298960-5299065
Coord A exon
NA
Coord C2 exon
chr16:5302014-5302725
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTATCT
5' ss Score
2.7
3' ss Seq
TAGAAATTAATCTATTTCAGTAT
3' ss Score
4.49
Exon sequences
Seq C1 exon
CAATTACTACACAAATACAAACTATAAAGAAGATGTTCATTTAGAAACACTAGACATATACTCTGTTGACCCATACAGCCCAGCAAACTAATCAGAAGACAAACTG
Seq A exon
NA
Seq C2 exon
TATGCCTCACCGCTTGGAACCCTACTGATGGTTGGAAAGAAACCATTCTACTATCAATAGGTGGATTAGTATGGTCTCAACATCAGTGAGATTGTTTCATAAGATTTAACTCCTATATGCAATCGGTCTCAAGCAGAACAAAGAAAAGTTGCTTGATGATGGTAAAGATGGGAGCCCAGTTTTACCGCCATGTGCATTTCAAGGACTTTTTGAAGCCTCACTGTGATGTACCTGGAGACAGGCTATGGCTATAAACAGTTACATATCTGAAGTGTTACATTTTTAAGGAAGGCACTAAAAAGAGCTTTCCTTGTGTCTAGAAAGAATCTAGACATATATACTGCAATCAACATACTTATGTTACCATATACTTTTAATTATAGTGTGGTTTTAATTATTTAAGCAAAGTATGAAGCATATCCTGTGGTTATGATAGGCATACATTTGTTGGGAAACCTGTTTTTATTTTAATAAGAGCATCCTTCTCTGATTTAGTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038496-31-32,32-32-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTGACCCATACAGCCCA
R:
GGAAAGCTCTTTTTAGTGCCTTCC
Band lengths:
355-824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development