RnoALTD0007752-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000034164 | Cr2
Description
complement C3d receptor 2 [Source:RGD Symbol;Acc:1310065]
Coordinates
chr13:113890272-113897459:-
Coord C1 exon
chr13:113897355-113897459
Coord A exon
chr13:113897351-113897354
Coord C2 exon
chr13:113890272-113892712
Length
4 bp
Sequences
Splice sites
5' ss Seq
TTGGTATAT
5' ss Score
1.75
3' ss Seq
CTCCCTTTTGTTGCCTGTAGATC
3' ss Score
10.99
Exon sequences
Seq C1 exon
CAATTATTATACAAAAACAAGGCCCAAAGATGGAGCTCTTCATTTAGAAACGCGAGAAGTATATGCTGTTGATCCATACAACCCAGCAAGTTGATCACATGACAA
Seq A exon
GTTG
Seq C2 exon
ATCAAGATATAGAACTCTCAGCGACCTCTTCAGCACAATATCTGCCTACATGCCACCAAGCTACCCTCCATGACAACAATGGACTGTTCTGATCTATAAGCCAGCCCCAATTAAATGTTTTTCTCTATGAGTTGTCACGGTTATGGTATCTCTTCACAGAAACAGAAACCCAAAATAAGACGGAAGTCGATACTAGGAACTGGGATATTGTCGTGATAGTTCTGAACATACTTTGGTTTGGAAAGATGTAGACTTTGGGATTTGGGGCTAGGAAGCAGTGGAATGCTTTAAGCACGACTGAATAGACCACCCTAGAAGGAGCACAGAAGACAGTGATGCTGAGGGTGATTTGAACTGTGAGAGCCTGGCTCAAGAGGTTTCAGATAAGAAGAATTTTAGTATGTGGCCTACAGACTGTTCTTGTGATATTTTAGTGAAGATCGTGGCTGCTCATGCCCTTGTCCAAAGAAAAAAAGTGCCTGTGGCTAAATTAAAAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034164-30-33,31-33,32-33-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCCAGCAAGTTGATCACA
R:
TGTCATGGAGGGTAGCTTGGT
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]