MmuALTD0003838-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000075517 | Cyp2d37-ps
Description
cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene [Source:MGI Symbol;Acc:MGI:3721937]
Coordinates
chr15:82689762-82690223:-
Coord C1 exon
chr15:82690084-82690223
Coord A exon
chr15:82690082-82690083
Coord C2 exon
chr15:82689762-82689862
Length
2 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGC
5' ss Score
3.73
3' ss Seq
ATGGGAAAATGTCCTTCCAGGCC
3' ss Score
4.74
Exon sequences
Seq C1 exon
GCAAAGGGAAACCCTGAGAGTAGCTTCAATGATGCAAATCTATGTCTGGTTGTCCTTGACCTGCTGGGTGCTGCAACTGTGACCACCTCAACCACACTGTCCTGGGCCCTGCTGCTTATGATCCTGCATCCGGATGTGCA
Seq A exon
GT
Seq C2 exon
GCCAAGTACAACAGGAAATCGATGAGGTCATTTGGTATGTGTGGCTTCCAGAGATGGCAGACCAGGTCTGCATGCCCTTCACCAATGCTGTCATTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075517-1-2,2-2,3-2-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(59.8=59.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCTGCTTATGATCCTGC
R:
AGACCTGGTCTGCCATCTCTG
Band lengths:
103-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types