MmuALTD0004267-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000048264 | Dip2c
Description
disco interacting protein 2 homolog C [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9614347-9615825:+
Coord C1 exon
chr13:9614347-9614456
Coord A exon
NA
Coord C2 exon
chr13:9615745-9615825
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATATCCTTGTATCATTCCAGTTC
3' ss Score
7.53
Exon sequences
Seq C1 exon
AAATTGGCCCTGCCTCAGTGATGGTGGGAAATCTAGTATCTGGGAAGAGGATTGCCCAGGCTAGCGGCAGAGACCTGGGTCAGATAGAGGACAATGACCAGGCCCGGAAG
Seq A exon
NA
Seq C2 exon
TTCCTGTTCCTCTCAGAGGTCTTACAGTGGAGAGCACAGACCACTCCTGACCATCTGCTGTACACTCTGCTCAACTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-42-38,43-38-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(4.0=70.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAGACCTGGGTCAGATA
R:
TCAGGAGTGGTCTGTGCTCTC
Band lengths:
95-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types