RnoALTD0009028-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63754778-63756247:+
Coord C1 exon
chr17:63754778-63754887
Coord A exon
NA
Coord C2 exon
chr17:63756167-63756247
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATATCCTTGTTTCATTCCAGTTC
3' ss Score
8.69
Exon sequences
Seq C1 exon
AAATTGGCCCTGCCTCAGTGATGGTGGGAAACCTAGTGTCTGGGAAGAGGATTGCCCAGGCTAGTGGCAGAGACCTGGGTCAGATAGAAGACAATGACCAGGCCCGGAAG
Seq A exon
NA
Seq C2 exon
TTCCTATTCCTCTCAGAGGTCTTACAGTGGAGAGCGCAGACCACTCCAGACCACCTGCTGTACACTCTGCTCAATTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288-42-38,43-38-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(4.0=70.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGATTGCCCAGGCTAGT
R:
TCTGCGCTCTCCACTGTAAGA
Band lengths:
106-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]