RnoALTD0009028-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63754778-63756247:+
Coord C1 exon
chr17:63754778-63754887
Coord A exon
chr17:63754888-63754899
Coord C2 exon
chr17:63756167-63756247
Length
12 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
ATATCCTTGTTTCATTCCAGTTC
3' ss Score
8.69
Exon sequences
Seq C1 exon
AAATTGGCCCTGCCTCAGTGATGGTGGGAAACCTAGTGTCTGGGAAGAGGATTGCCCAGGCTAGTGGCAGAGACCTGGGTCAGATAGAAGACAATGACCAGGCCCGGAAG
Seq A exon
GTGAGAACCGAG
Seq C2 exon
TTCCTATTCCTCTCAGAGGTCTTACAGTGGAGAGCGCAGACCACTCCAGACCACCTGCTGTACACTCTGCTCAATTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288-42-38,43-38-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=PU(4.0=70.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGATTGCCCAGGCTAGT
R:
TCTGCGCTCTCCACTGTAAGA
Band lengths:
106-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]