MmuALTD0004319-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46239186-46244212:+
Coord C1 exon
chr1:46239186-46239236
Coord A exon
NA
Coord C2 exon
chr1:46244000-46244212
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTCTACCTTATTTTTCTCAGGCC
3' ss Score
7.71
Exon sequences
Seq C1 exon
GTGATTGGAGATGCAATTGCTGCCTATACCAAAAATTCACGAATTAGTTGG
Seq A exon
NA
Seq C2 exon
GCCCTTGAAGGCTACTTGGCAAAATGCAACCATCAAATTGATGATATTGTCACATTGGTTCGTGGCAAATTGTCCAAGCAGAACCGTGTTACTCTGGGAGCCCTTGTGGTACTGGATGTTCACGCTAGAGATGTGCTTGCCAGCCTTGTAGATAAAAAGATCAGTGATGACTCGGACTTCCAGTGGTTAAGTCAGCTTAGATACTACTGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-23-22,24-22-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(2.2=19.1)
A:
NA
C2:
PF127742=AAA_6=PU(26.2=20.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTGGAGATGCAATTGCTG
R:
ACATCCAGTACCACAAGGGCT
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: