MmuEX0015013 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46234075-46244212:+
Coord C1 exon
chr1:46234075-46234273
Coord A exon
chr1:46239186-46239326
Coord C2 exon
chr1:46244000-46244212
Length
141 bp
Sequences
Splice sites
3' ss Seq
CCATTTTTTTTTAAAATTAGGTG
3' ss Score
8.09
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
AGTGCAGCCTCACCTCAAGAAATGCTTTGAAGGAATTGCAAAGGTCGAATTTACAGAAACTTTGGATATTACACATATGAAGAGTAGTGAGGGAGAAGTCGTGGAGCTTGTAGATACCATTTCAACAGCCAAAGCCAGGGGCCAGGTGGAGAAGTGGTTGGTTGAGTTAGAGAGGACTATGATTAAGTCCATTCACAAG
Seq A exon
GTGATTGGAGATGCAATTGCTGCCTATACCAAAAATTCACGAATTAGTTGGGTAAGAGATTGGCCTGGACAGACTGTTCTCTGTGTATCTCAAACCTTTTGGACAGTAGAAGTCCAAACTGCTATACCTAAGGGGCATAGG
Seq C2 exon
GCCCTTGAAGGCTACTTGGCAAAATGCAACCATCAAATTGATGATATTGTCACATTGGTTCGTGGCAAATTGTCCAAGCAGAACCGTGTTACTCTGGGAGCCCTTGTGGTACTGGATGTTCACGCTAGAGATGTGCTTGCCAGCCTTGTAGATAAAAAGATCAGTGATGACTCGGACTTCCAGTGGTTAAGTCAGCTTAGATACTACTGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'22-22,'22-21,24-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(18.4=66.7)
A:
PF083938=DHC_N2=PD(2.2=19.1)
C2:
PF127742=AAA_6=PU(26.2=20.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGGGAGAAGTCGTGGAG
R:
GCAAGCACATCTCTAGCGTGA
Band lengths:
254-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: