RnoEX0028568 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60271921-60280962:-
Coord C1 exon
chr9:60280764-60280962
Coord A exon
chr9:60276801-60276941
Coord C2 exon
chr9:60271921-60272133
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTACCATTTTTTAATTAGGTG
3' ss Score
8.88
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGTGCAGCCTCACCTCAAGAAGTGCTTTGAAGGAATTGCAAGGGTTGAATTTACAGAAACTTTGGATATTACACATATGAAGAGTAGTGAAGGAGAAGTCGTGGAGCTCGTAGATACCATTTCAACAACCAAAGCCAGGGGCCAGGTGGAGAAGTGGTTGGTTGAGTTAGAGAGGATTATGATTAAGTCCATTCACAAG
Seq A exon
GTGATTGGAGATGCAATTACTGCTTATACAAAAAATGCACGAATTAATTGGGTAAGAGATTGGCCTGGACAGACTGTTCTCTGTGTATCTCAAACCTTTTGGACAGTAGAAGTCCAAGTTGCTATACCTATGGGGCATAAG
Seq C2 exon
GCCCTTGAAGACTACTTGGGAAAATGTAACCATCAAATTGATGATATTGTCACGTTGGTCCGTGGCAAATTGTCCAAGCAGAACCGTGTTACACTGGGAGCCCTTGTGGTACTGGATGTTCACGCTAGAGATGTCCTTGCCAACCTTGTAAAGAAAAGAATCAGCGATGACACTGACTTTGAGTGGTTAAGTCAGCTTAGATACTACTGGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'12-16,'12-14,13-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(15.9=100)
A:
PF083938=DHC_N2=PD(2.2=19.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGAGAAGTCGTGGAGCT
R:
GGCAAGGACATCTCTAGCGTG
Band lengths:
253-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]