MmuEX1008693 @ mm10
Exon Skipping
Gene
ENSMUSG00000096141 | Dnah7a
Description
dynein, axonemal, heavy chain 7A [Source:MGI Symbol;Acc:MGI:2685838]
Coordinates
chr1:53567035-53582692:-
Coord C1 exon
chr1:53582494-53582692
Coord A exon
chr1:53577189-53577329
Coord C2 exon
chr1:53567035-53567247
Length
141 bp
Sequences
Splice sites
3' ss Seq
ACCATTTTTTTTTAAATTAGGTG
3' ss Score
8.62
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
AGTGCAGCCTCACCTCAAGAAATGCTTTGAAGGAATTGCAAAGGTCGAATTTACAGAAACATTGGATATTACACATATGAAGAGTAGTGAGGGAGAAGTCGTGGAGCTTGTAGATACCATTTCAACAGCCAAAGCCAGGGGCCAGGTGGAGAAGTGGTTGGTTGAGTTAGAGAGGACTATGATTAAGTCCATTCACAAG
Seq A exon
GTGATTAGAGATGCAATTGTTGCCTATACCAAAACTTCACGGATTAGTTGGGTAAGAGATTGGCCTGGACAGACTGTTCTCTGTGTATCTCAAACCTTTTGGACGGTAGAAGTCCAAATCGCTATACCTGAGGGGCACCGG
Seq C2 exon
GCCCTTGAAGGCTACTTGGCAAAATGCAACCATCAAATTGATGATATTGTCACATTGGTTCGTGGCAAATTGTCCAAGCAGAACCGTGTTACTCTGGGAGCCCTTGTGGTACTGGATGTTCACGCTAGAGATGTGCTTGCCAGCCTTGTAGATAAAAAGATCAGTGATGACTCGGACTTCCAGTGGTTAAGTCAGCTTAGATACTACTGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096141_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(15.9=100)
A:
PF083938=DHC_N2=PD(2.2=19.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGGGAGAAGTCGTGGAG
R:
GCAAGCACATCTCTAGCGTGA
Band lengths:
254-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types