GgaEX6041812 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9241293-9247214:-
Coord C1 exon
chr7:9247016-9247214
Coord A exon
chr7:9244956-9245096
Coord C2 exon
chr7:9241293-9241505
Length
141 bp
Sequences
Splice sites
3' ss Seq
CATGCTTCTATCCCATATAGGTT
3' ss Score
9.85
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGTACAACCTCACCTGAAAAAGTGTTTTGAAGGAATTGCAAGAGTAGAGTTTACTGATGTGTTAGATATTACACACATTAAAAGTAGTGAAGGAGAGACTGTGGAACTCACGCAGACCATTTCAACTTCTGAAGCTAGAGGTCAAGTTGAAAGATGGCTCGTTGAACTGGAGGCGGCTATGCTGAACTCTGTCCACAAG
Seq A exon
GTTATTCAGGACGCAATTGAAGCTTATCCCAAAACTCCACGTGTTGATTGGGTACGAGAGTGGCCTGGACAAACAGTTCTTTGTGTATCCCAAACTTTTTGGACGATGCAGGTAGAAATGGCTATTAGAAATGGCCAGAAG
Seq C2 exon
GCACTAGAGGATTTTCTGGAACAGAATAATAGACAGATAGAGGACATTGTCACCTTGGTGCGAGGAAAGCTGTCTAAGCAGAATCGTGTGACGCTTGGAGCACTTGTTGTGCTTGATGTTCATGCTAGGGATGTTCTTGCATCTCTAGTAAGCAAGAAAATCAAAGATGAGAATGATTTTGAATGGCTAAGTCAGCTAAGATACTACTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'22-26,'22-24,23-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(15.9=100)
A:
PF083938=DHC_N2=PD(2.2=19.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAACTCACGCAGACCATT
R:
AGATGCAAGAACATCCCTAGCA
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]