BtaEX6010428 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84929367-84938441:-
Coord C1 exon
chr2:84938243-84938441
Coord A exon
chr2:84935884-84936024
Coord C2 exon
chr2:84929367-84929579
Length
141 bp
Sequences
Splice sites
3' ss Seq
GCATTTTCTTTTTCAATTAGGTA
3' ss Score
8.87
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGTGCAACCTCACTTGAAGAAATGTTTTGAAGGAATTGCAAAGGTGGAATTTACAGAAAGTTTGGACATTACTCACATGAAAAGTAGTGAGGGAGAGGTGGTGGAACTCGTAGACACCATTTCAACAGCCAAAGCCAGAGGTCAAGTGGAGAAGTGGTTGGTTGAGTTAGAGAGAGTTATGATTAAATCCATCCACAAG
Seq A exon
GTAATTAAAGATGCAATTCTTGCCTATACACAAAATGAACGAATTAACTGGGTAAGAGAGTGGCCTGGACAAACAGTGCTCTGTGTATCCCAAACCTTTTGGACATTAGAAGTACAGACAGCTATTGCAAAAGGACAAGAG
Seq C2 exon
GCCCTTGAGGAATATTTGGAAAGATGTAACAAGCAAATTGATGATATTGTCACGTTGGTTCGTGGCAAATTGTCCAAGCAAAATCGTGTTACTCTGGGAGCCCTTGTGGTGCTGGATGTCCATGCTAGAGATGTTCTCACAACACTTGTTAAAAAGAAAGTTAATGATGACTCGGACTTTGAATGGTTAAGTCAGCTTAGGTACTATTGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(15.9=100)
A:
PF083938=DHC_N2=PD(2.2=19.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGAATTGCAAAGGTGGA
R:
TGGACAATTTGCCACGAACCA
Band lengths:
248-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]