HsaEX6017564 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196788319-196799513:-
Coord C1 exon
chr2:196799315-196799513
Coord A exon
chr2:196791150-196791290
Coord C2 exon
chr2:196788319-196788531
Length
141 bp
Sequences
Splice sites
3' ss Seq
GCATATTCTTTTTTGATTAGGTA
3' ss Score
6.69
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGTGCAACCTCACTTGAAGAAATGTTTTGAAGGAATCGCAAAGGTAGAATTTACGGAAACTTTAGACATTACTCACATGAAGAGCAGCGAAGGAGAGGTTGTAGAACTCATAGAGATTATTTCAACAGCCAAAGCCAGAGGTCAAGTGGAGAAGTGGTTGGTTGAATTAGAGAGAGTTATGATTAACTCCATCCACAAG
Seq A exon
GTAACTGGAGATGCAACTTTTGCCTATACAAAATATGAACGAATTAACTGGGTAAGGGATTGGCCTGGACAGACTGTTCTCTGTGTATCCCAAATCTTTTGGACAAAAGAAGTACAAACAGCTATTCCAATGGGGATAAAG
Seq C2 exon
GCTCTTGAGCAATACTTGAAAACATGTAACAGACAAATTGATGATATTGTCACTTTGGTGCGTGGCAAATTGTCCATGCAGAATCGCGTAACTCTGGGAGCACTTGTGGTACTGGATGTCCATGCTAGAGATGTCCTCTCATCACTTGTAAAAAAAAATATTAGCGATGACTCTGACTTTGAATGGTTAAGTCAGCTTAGGTACTACTGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'24-25,'24-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(15.9=100)
A:
PF083938=DHC_N2=PD(2.2=19.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGAAGAGCAGCGAAGGA
R:
TCCAGTACCACAAGTGCTCCC
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)