Special

MmuALTD0005693-1/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:151889044-151891209:+
Coord C1 exon
chr3:151889044-151889172
Coord A exon
NA
Coord C2 exon
chr3:151891135-151891209
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTTGTTTGTTTTTTAAAAAGGAG
3' ss Score
5.97
Exon sequences
Seq C1 exon
CCAAGGCAGGAGCAGATCCAAACTCGGCAGCTTGGGCTGCTTATTATGCTCACTATTACCAGCAGCAGGCACAACCCCCACCTGCAGCTCCTGCCGGTGCACCAGCTACAACCCAAACGAACGGACAAG
Seq A exon
NA
Seq C2 exon
GAGATCAGCAGGCTCCAGCTCCAGCTGGACAGGTTGATTATACAAAGGCTTGGGAAGAATACTACAAGAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-22-20,23-20-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.717 A=NA C2=0.577
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF090055=DUF1897=PU(75.9=84.6)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000078460





     
                   









    
Main Skipping Isoform:
ENSMUSP00000101727





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000078460f2231A
          









    
Other Skipping Isoforms:
ENSMUSP00000130145
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr1:78422255-78422256 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr3:66984191-66984192 
Chicken
(galGal4)
chr8:17806031-17806032 
HIGH PSI
GgaALTD1010075-1/2
(FUBP1)
Chicken
(galGal3)
chr8:19606262-19606263 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCACTATTACCAGCAGCAGGC

				
R: 
AGCTGGAGCCTGCTGATCTC

				
Band lengths: 
100-109

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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