MmuALTD0005693-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:152226080-152228245:+
Coord C1 exon
chr3:152226080-152226208
Coord A exon
NA
Coord C2 exon
chr3:152228171-152228245
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTTGTTTGTTTTTTAAAAAGGAG
3' ss Score
5.97
Exon sequences
Seq C1 exon
CCAAGGCAGGAGCAGATCCAAACTCGGCAGCTTGGGCTGCTTATTATGCTCACTATTACCAGCAGCAGGCACAACCCCCACCTGCAGCTCCTGCCGGTGCACCAGCTACAACCCAAACGAACGGACAAG
Seq A exon
NA
Seq C2 exon
GAGATCAGCAGGCTCCAGCTCCAGCTGGACAGGTTGATTATACAAAGGCTTGGGAAGAATACTACAAGAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-39-44,40-44-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF090055=DUF1897=PU(75.9=84.6)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTATTACCAGCAGCAGGC
R:
AGCTGGAGCCTGCTGATCTC
Band lengths:
100-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types