RnoALTD0011961-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257443255-257445094:+
Coord C1 exon
chr2:257443255-257443383
Coord A exon
NA
Coord C2 exon
chr2:257445020-257445094
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
CTGTTTTGTTTTTTAAAAAGGAG
3' ss Score
6.74
Exon sequences
Seq C1 exon
CTAAGGCAGGAACGGATCCAAACTCGGCAGCTTGGGCTGCCTATTATGCCCACTATTACCAGCAGCAGGCACAGCCCCCGCCTGCAGCTCCTGCTGGAGCACCAACCACAACCCAGACTAATGGACAAG
Seq A exon
NA
Seq C2 exon
GAGATCAGCAGAATCCAGCTCCAGCTGGACAAGTTGATTATACAAAGGCTTGGGAAGAGTACTACAAGAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370-21-27,22-27-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.745 A=NA C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF090055=DUF1897=PU(75.9=84.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTATTACCAGCAGCAGGC
R:
GCTGGAGCTGGATTCTGCTG
Band lengths:
105-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]