RnoEX0037085 @ rn6
Exon Skipping
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257440549-257445094:+
Coord C1 exon
chr2:257440549-257440628
Coord A exon
chr2:257443255-257443392
Coord C2 exon
chr2:257445020-257445094
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTGTCTTTTTAAATCCTAGCTA
3' ss Score
6.56
5' ss Seq
ACGGTAATA
5' ss Score
6.25
Exon sequences
Seq C1 exon
TGGTCCTCCAGCCCCATATGCTCCCCAGGGATGGGGAAATGCATATCCACATTGGCAGCAGCAGGCTCCTCCTGACCCAG
Seq A exon
CTAAGGCAGGAACGGATCCAAACTCGGCAGCTTGGGCTGCCTATTATGCCCACTATTACCAGCAGCAGGCACAGCCCCCGCCTGCAGCTCCTGCTGGAGCACCAACCACAACCCAGACTAATGGACAAGGTAACTACG
Seq C2 exon
GAGATCAGCAGAATCCAGCTCCAGCTGGACAAGTTGATTATACAAAGGCTTGGGAAGAGTACTACAAGAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370-'20-27,'20-25,22-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.745 C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF090055=DUF1897=PU(75.9=84.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTCCAGCCCCATATG
R:
CCATTTTCTTGTAGTACTCTTCCCA
Band lengths:
155-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]