GgaEX1025662 @ galGal4
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
far upstream element-binding protein 1 [Source:RefSeq peptide;Acc:NP_001006535]
Coordinates
chr8:17802841-17806759:+
Coord C1 exon
chr8:17802841-17802920
Coord A exon
chr8:17805902-17806030
Coord C2 exon
chr8:17806685-17806759
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCTTATATTTTATTTCACAGGAA
3' ss Score
9.58
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
TGGTCCTCCAGCTCCGTATGCTCCACAAGGGTGGGGAAATGCTTATCCACACTGGCAGCCACCAAATCCACCAGATCCAG
Seq A exon
GAAAGCCAGGAACAGATCCTAATTCAGCAGCATGGGCAGCTTACTATGCTCACTACTATCAGCAGCAAGCACAGCCACCACCTGCAGCCCCTCCTGGTGGACCAGCTACAACCCAAACCAACGGGCAAG
Seq C2 exon
GAGATCAGCCAAACCCAGCACCAGCAGGGCAGGTTGACTACACAAAGGCATGGGAGGAATACTACAAAAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.690 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTCCAGCTCCGTATG
R:
TGTAGTATTCCTCCCATGCCT
Band lengths:
146-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]