DreEX0033761 @ danRer10
Exon Skipping
Gene
ENSDARG00000029248 | fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
Coordinates
chr2:8858063-8859333:+
Coord C1 exon
chr2:8858063-8858139
Coord A exon
chr2:8858216-8858356
Coord C2 exon
chr2:8859274-8859333
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTCATCCTTTTCCACTTAAGCTG
3' ss Score
5.58
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
TGGACCCCCAGCACCATACCAACCTCAAGGCTGGGGCAATGGATACCCCCACTGGCAGCAAGGACAGCCTGATCCTA
Seq A exon
CTGTTTGTTCCCCAGATAAAGCAGCGGCTGATGCTAATGCTGCAGCATGGGCTGCCTATTATTCTCAGTACCAGCAGCAGCCTCAGGGTCCAATGACACCCACCTCGGCAGCCCCAGGCACAACCCAAGCCAATGGACAAG
Seq C2 exon
GTCAAGGCCAGCCTCAGCAGGACTACACCAAGGCGTGGGAAGAGTACTATAAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029248-'15-20,'15-15,16-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.958 C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCCAGCACCATACCAA
R:
GCTTCTTATAGTACTCTTCCCACGC
Band lengths:
132-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]