MmuEX6074741 @ mm9
Exon Skipping
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:151886250-151891209:+
Coord C1 exon
chr3:151886250-151886329
Coord A exon
chr3:151889044-151889181
Coord C2 exon
chr3:151891135-151891209
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTTTACATTGTAGCCA
3' ss Score
7.92
5' ss Seq
ACGGTAATG
5' ss Score
6.53
Exon sequences
Seq C1 exon
CGGTCCTCCAGCCCCATATGCTCCCCAGGGATGGGGAAATGCGTATCCACATTGGCAGCAACAGGCTCCTCCTGACCCAG
Seq A exon
CCAAGGCAGGAGCAGATCCAAACTCGGCAGCTTGGGCTGCTTATTATGCTCACTATTACCAGCAGCAGGCACAACCCCCACCTGCAGCTCCTGCCGGTGCACCAGCTACAACCCAAACGAACGGACAAGGTAACTACG
Seq C2 exon
GAGATCAGCAGGCTCCAGCTCCAGCTGGACAGGTTGATTATACAAAGGCTTGGGAAGAATACTACAAGAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-'21-20,'21-19,23-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.721 C2=0.577
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF090055=DUF1897=PU(75.9=84.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCCTCCAGCCCCATATG
R:
CCATTTTCTTGTAGTATTCTTCCCA
Band lengths:
155-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: