BtaEX6016937 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008926 | FUBP1
Description
Bos taurus far upstream element (FUSE) binding protein 1 (FUBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076846]
Coordinates
chr3:66980432-66986173:+
Coord C1 exon
chr3:66980432-66980511
Coord A exon
chr3:66984062-66984190
Coord C2 exon
chr3:66986096-66986173
Length
129 bp
Sequences
Splice sites
3' ss Seq
TATAACTTTGTTTATTCTAGCTA
3' ss Score
8.25
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
TGGCCCTCCAGCCCCTTATGCTCCCCAAGGGTGGGGAAATGCATACCCACATTGGCAGCAACAAGCCCCTCCAGATCCAG
Seq A exon
CTAAAACAGGAACGGATCCAAATTCAGCAGCTTGGGCTGCTTATTATGCTCACTATTACCAGCAACAAGCACAGCCACCACCTGCAGCTCCTGCTGGTGCACCAACTACAACCCAAACCAATGGACAAG
Seq C2 exon
AAGGAGATCAGCAGAATCCAGCTCCAGCTGGACAGGTTGATTATACCAAGGCTTGGGAAGAGTACTACAAGAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008926-'23-25,'23-23,24-25=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.894 C2=0.864
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF090055=DUF1897=PU(78.6=81.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGCCCCTTATGCTCC
R:
CCATTTTCTTGTAGTACTCTTCCCA
Band lengths:
154-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]