RnoALTD0011961-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257443255-257445094:+
Coord C1 exon
chr2:257443255-257443383
Coord A exon
chr2:257443384-257443392
Coord C2 exon
chr2:257445020-257445094
Length
9 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATA
5' ss Score
6.25
3' ss Seq
CTGTTTTGTTTTTTAAAAAGGAG
3' ss Score
6.74
Exon sequences
Seq C1 exon
CTAAGGCAGGAACGGATCCAAACTCGGCAGCTTGGGCTGCCTATTATGCCCACTATTACCAGCAGCAGGCACAGCCCCCGCCTGCAGCTCCTGCTGGAGCACCAACCACAACCCAGACTAATGGACAAG
Seq A exon
GTAACTACG
Seq C2 exon
GAGATCAGCAGAATCCAGCTCCAGCTGGACAAGTTGATTATACAAAGGCTTGGGAAGAGTACTACAAGAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370-21-27,22-27-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.745 A=NA C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF090055=DUF1897=PU(75.9=84.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTATTACCAGCAGCAGGC
R:
GCTGGAGCTGGATTCTGCTG
Band lengths:
105-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]