MmuALTD0005771-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000060988 | Galnt13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:MGI Symbol;Acc:MGI:2139447]
Coordinates
chr2:54436629-54516681:+
Coord C1 exon
chr2:54436629-54436729
Coord A exon
NA
Coord C2 exon
chr2:54516442-54516681
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTCA
5' ss Score
-0.37
3' ss Seq
ATTTTTCTGTTCCAATATAGTGG
3' ss Score
6.51
Exon sequences
Seq C1 exon
CGGCTCTCGGCGCAGCCGGCCACTGGTCGGGCTGGATCCAGGCAGCATCCCGTGCGCGGACCGCCGAGCTCTCTCCGCGGGATCGACAGCCACCGTAGCAG
Seq A exon
NA
Seq C2 exon
TGGGATGCATCTTGCTTTTGTCCTGGAGATCACCTCTGTGGCTTGGATATATCTCAGGAACACCCGTCTTCAGTCTCCGTATTGATTAGTAATCAAGCATGAGGAGATTTGTCTACTGCAAGGTGGTTCTGGCCACTTCTCTGATGTGGGTGCTTGTTGATGTCTTCTTACTCCTGTACTTCAGCGAGTGTAACAAGTGTGATGACAAGAAGGAGAGATCCCTGCTGCCTGCGCTGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060988-0-2,1-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGACAGCCACCGTAGCA
R:
GCAGCAGGGATCTCTCCTTCT
Band lengths:
249-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types