MmuALTD0005771-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000060988 | Galnt13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:MGI Symbol;Acc:MGI:2139447]
Coordinates
chr2:54436629-54516681:+
Coord C1 exon
chr2:54436629-54436729
Coord A exon
chr2:54436730-54436830
Coord C2 exon
chr2:54516442-54516681
Length
101 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
ATTTTTCTGTTCCAATATAGTGG
3' ss Score
6.51
Exon sequences
Seq C1 exon
CGGCTCTCGGCGCAGCCGGCCACTGGTCGGGCTGGATCCAGGCAGCATCCCGTGCGCGGACCGCCGAGCTCTCTCCGCGGGATCGACAGCCACCGTAGCAG
Seq A exon
GTCTCAGTCTTTCTTCTCTCTCTTCTCTTCTTGGTGACGGTTTGGGACGGACCCCTTTCGGACCGCAGGAGAGTCCGGCTGGGCGCCGCAAAGTCCCGCCG
Seq C2 exon
TGGGATGCATCTTGCTTTTGTCCTGGAGATCACCTCTGTGGCTTGGATATATCTCAGGAACACCCGTCTTCAGTCTCCGTATTGATTAGTAATCAAGCATGAGGAGATTTGTCTACTGCAAGGTGGTTCTGGCCACTTCTCTGATGTGGGTGCTTGTTGATGTCTTCTTACTCCTGTACTTCAGCGAGTGTAACAAGTGTGATGACAAGAAGGAGAGATCCCTGCTGCCTGCGCTGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060988-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGACAGCCACCGTAGCA
R:
GCAGCAGGGATCTCTCCTTCT
Band lengths:
249-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types