MmuALTD0005998-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000072915 | Gm12258
Description
predicted gene 12258 [Source:MGI Symbol;Acc:MGI:3651534]
Coordinates
chr11:58851097-58854386:+
Coord C1 exon
chr11:58851097-58851223
Coord A exon
chr11:58851224-58851227
Coord C2 exon
chr11:58854260-58854386
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
GGAGAAATGTCTCATTACAGGGG
3' ss Score
2.92
Exon sequences
Seq C1 exon
TCCTTCATGGCTGTCATGGCAATGATGGCAGATGGGAGTGGCTCCGTCAGTGGAGGTGAGAGTGTGAAGAGGAGTCGCTGTTCACACCGTGGCAGACCTGGAACCTGAGAGAGAAGTGGGAACCAGG
Seq A exon
GCAG
Seq C2 exon
GGGTTGGTGTCATTTGAGGATGTGTCTGTGGACTTCACCTGGGATGAGTGGCAGGACCTGGATGACAGTCAGAGGAAGCTCTACAGGGACGTGATGCTGGAGACCTACAGCAGCCTGCTGTCCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072915-4-4,5-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACCTGGAACCTGAGAGA
R:
ATCCAGGTCCTGCCACTCATC
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types