MmuEX0020764 @ mm10
Exon Skipping
Gene
ENSMUSG00000072915 | Gm12258
Description
predicted gene 12258 [Source:MGI Symbol;Acc:MGI:3651534]
Coordinates
chr11:58848646-58854386:+
Coord C1 exon
chr11:58848646-58848702
Coord A exon
chr11:58851088-58851227
Coord C2 exon
chr11:58854260-58854386
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATTTTGGTTCATTGTTTCAGAGG
3' ss Score
7
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
CTGTGGTTTGATGGTCCTCTCAGATCTGAAAGAGTTAAGACAATGGATACATCTGAG
Seq A exon
AGGTATCAGTCCTTCATGGCTGTCATGGCAATGATGGCAGATGGGAGTGGCTCCGTCAGTGGAGGTGAGAGTGTGAAGAGGAGTCGCTGTTCACACCGTGGCAGACCTGGAACCTGAGAGAGAAGTGGGAACCAGGGCAG
Seq C2 exon
GGGTTGGTGTCATTTGAGGATGTGTCTGTGGACTTCACCTGGGATGAGTGGCAGGACCTGGATGACAGTCAGAGGAAGCTCTACAGGGACGTGATGCTGGAGACCTACAGCAGCCTGCTGTCCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072915_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.711 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSMUST00000139337fB1807
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGTTTGATGGTCCTCTCA
R:
CTGCTGTAGGTCTCCAGCATC
Band lengths:
170-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types