MmuALTD0006228-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000041762 | Gpr155
Description
G protein-coupled receptor 155 [Source:MGI Symbol;Acc:MGI:1915776]
Coordinates
chr2:73219881-73221015:-
Coord C1 exon
chr2:73220889-73221015
Coord A exon
chr2:73220852-73220888
Coord C2 exon
chr2:73219881-73220365
Length
37 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TCTTTTCTTCTTTTTTGCAGAGG
3' ss Score
10.55
Exon sequences
Seq C1 exon
GGCTTCCTCATACTCCACCAAAAGTTATATTCAGCTTGGATAAGTGATTACTATGTGCCGGCTGTGATTAGACTGCAAGGACTCTACTTGAAGTAGACATTGATATTGGCACCTCACAGATGATAAG
Seq A exon
GTGAAGCACAAAAACTCAAGTTTGGGGTTCCAAGTTG
Seq C2 exon
AGGCCAGTTTGGAAGTGGAGGGAGAGAGAAAATGGATTCTTATTTCTCAGCAAAGAACTCAACGCTTGCTGGTGATATGAATGCGACTTGGCCTGCCTCTCATGGATTTAATGCCACCGGCGATCCACCTTCGATGTCGATAACCCGGCTCTTCCCGGCCTTACTGGAGTGCTTTGGCATAGTCCTTTGTGGCTACATAGCAGGAAGGGCCAATATCATAACCTCAACACAGGCCAAAGGACTGGGGAATTTCGTCTCCAGATTTGCCCTTCCAGCCTTATTATTCAAAAACATGGTTGTGCTTAATTTTTCCAACGTGGACTGGGCTTTTCTCTACAGCGTCTTAATTGGCAAAGCCTCCGTGTTTTTCATTGTGTGTGTATTAACCTTATTGGTGGCCAGTCCTGAGAGCCGGTTTAGCAAAGCTGGACTATTCCCTATTTTTGCTACACAGAGTAATGACTTTGCTTTGGGATACCCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041762-3-3,4-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0354713=Mem_trans=PU(67.5=73.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTACTATGTGCCGGCTGT
R:
TCTCTCTCCCTCCACTTCCAA
Band lengths:
113-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: