MmuALTD0006228-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000041762 | Gpr155
Description
G protein-coupled receptor 155 [Source:MGI Symbol;Acc:MGI:1915776]
Coordinates
chr2:73381824-73382958:-
Coord C1 exon
chr2:73382832-73382958
Coord A exon
chr2:73382795-73382831
Coord C2 exon
chr2:73381824-73382308
Length
37 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TCTTTTCTTCTTTTTTGCAGAGG
3' ss Score
10.55
Exon sequences
Seq C1 exon
GGCTTCCTCATACTCCACCAAAAGTTATATTCAGCTTGGATAAGTGATTACTATGTGCCGGCTGTGATTAGACTGCAAGGACTCTACTTGAAGTAGACATTGATATTGGCACCTCACAGATGATAAG
Seq A exon
GTGAAGCACAAAAACTCAAGTTTGGGGTTCCAAGTTG
Seq C2 exon
AGGCCAGTTTGGAAGTGGAGGGAGAGAGAAAATGGATTCTTATTTCTCAGCAAAGAACTCAACGCTTGCTGGTGATATGAATGCGACTTGGCCTGCCTCTCATGGATTTAATGCCACCGGCGATCCACCTTCGATGTCGATAACCCGGCTCTTCCCGGCCTTACTGGAGTGCTTTGGCATAGTCCTTTGTGGCTACATAGCAGGAAGGGCCAATATCATAACCTCAACACAGGCCAAAGGACTGGGGAATTTCGTCTCCAGATTTGCCCTTCCAGCCTTATTATTCAAAAACATGGTTGTGCTTAATTTTTCCAACGTGGACTGGGCTTTTCTCTACAGCGTCTTAATTGGCAAAGCCTCCGTGTTTTTCATTGTGTGTGTATTAACCTTATTGGTGGCCAGTCCTGAGAGCCGGTTTAGCAAAGCTGGACTATTCCCTATTTTTGCTACACAGAGTAATGACTTTGCTTTGGGATACCCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041762-4-3,5-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0354713=Mem_trans=PU(67.5=73.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTACTATGTGCCGGCTGT
R:
TCTCTCTCCCTCCACTTCCAA
Band lengths:
113-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types