RnoALTD0012904-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60100071-60101223:-
Coord C1 exon
chr3:60101088-60101223
Coord A exon
chr3:60101084-60101087
Coord C2 exon
chr3:60100071-60100555
Length
4 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TCTTTTCTTTTCTTTTTCAGAGA
3' ss Score
12.6
Exon sequences
Seq C1 exon
GCGCCTTCCTACTCCACCAAAAGTTATCTTCCACTTTGGATAAGTGATTACTGTGTGCTGGCCGTGATTAGATTGTAGGGGCTGGCGTCTCACAGATGATAAAGCGAAGCACAGAAACTTAAGTTTTGAGTTCAAG
Seq A exon
GTTG
Seq C2 exon
AGACCAGTCTGGAAGTACAGGGAGAGGGAAGATGGATTCTTATTTCCCAGCAAAGAACTCAACTCTTGCTGTTAATATGAATGAGACTTTGTCTGCCAGTCATGGCTTTAATTCCACCAGTGACCCACCTCCGATGTCAATAACCAGGCTCTTCCCAGCGTTACTCGAGTGCTTTGGCATCGTCCTTTGTGGGTACATAGCGGGAAGGGCCAATGTCATAACATCCACACAGGCCAAAGGACTGGGAAACTTCGTCTCCAGATTTGCCCTCCCAGCTTTATTATTCAAAAACATGGTTGTGCTTAATTTTGCCAATGTGGATTGGGCTTTTCTATATAGCATCCTAATTGGCAAGGCCTCTGTATTTTTCGTTGTATGCGTGTTAACCCTGTTGGTTGCCAGTCCTGAGAGTCGATTTAGCAAAGCTGGACTGTTCCCTATCTTTGCTACACAGAGCAATGACTTTGCTTTGGGATACCCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485-2-2,3-2,4-2-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0354713=Mem_trans=PU(66.7=73.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGATTGTAGGGGCTGGCGT
R:
CCCTCTCCCTGTACTTCCAGA
Band lengths:
97-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]