MmuALTD0006408-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000054206 | Gzmm
Description
granzyme M (lymphocyte met-ase 1) [Source:MGI Symbol;Acc:MGI:99549]
Coordinates
chr10:79693758-79694262:+
Coord C1 exon
chr10:79693758-79693942
Coord A exon
chr10:79693943-79694027
Coord C2 exon
chr10:79694124-79694262
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
GAGCAAGGTTTGCATTGCAGGCT
3' ss Score
3.16
Exon sequences
Seq C1 exon
CTCATGTGTTTCAGAAGGCTAAGCTTCAGCTTGATCCAGGTATTTATCTGAGGTTCTCTCACGTGGCTTGCAAGTGTGACATAGGAGTCTTATGTAAAGAGGTTATTTCTCTGTAGTGTGGACAATGCAGGAAGGCAACACAAGTTGACGGACCCGCAAGCCTAATCACAGACGAGAGGCTGCAG
Seq A exon
GTGGGGGATGGGTACTAAATTCCCCCAATCGGGGCTGGGTGAGAGCCAGAGAGGAGGACGGAGAAGATGGGAGATGTCCTGCCAG
Seq C2 exon
GCTACAGAACCTGAAGCTGGTGCTTGGCCTGCACAACCTCCATGATCTCCAAGATCCTGGCCTCACCTTCTACATCCGGGAAGCCATTAAACACCCTGGCTACAACCACAAATATGAGAACGACCTGGCACTGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054206-4-3,5-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0008921=Trypsin=FE(20.4=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGAAGGCAACACAAGTT
R:
GTGGTTGTAGCCAGGGTGTTT
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types