MmuEX0022257 @ mm10
Exon Skipping
Gene
ENSMUSG00000054206 | Gzmm
Description
granzyme M (lymphocyte met-ase 1) [Source:MGI Symbol;Acc:MGI:99549]
Coordinates
chr10:79692821-79694617:+
Coord C1 exon
chr10:79692821-79692980
Coord A exon
chr10:79694124-79694262
Coord C2 exon
chr10:79694351-79694617
Length
139 bp
Sequences
Splice sites
3' ss Seq
GAGCAAGGTTTGCATTGCAGGCT
3' ss Score
3.16
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
CAGGCAACAGATTTGAGACCCAGATCATTGGGGGTCGAGAGGCAGTCCCGCACTCCCGCCCATACATGGCCTCTCTACAGAAAGCCAAGTCCCATGTGTGTGGGGGAGTCCTTGTGCATCGGAAGTGGGTATTGACAGCTGCCCACTGCCTGTCTGAGCC
Seq A exon
GCTACAGAACCTGAAGCTGGTGCTTGGCCTGCACAACCTCCATGATCTCCAAGATCCTGGCCTCACCTTCTACATCCGGGAAGCCATTAAACACCCTGGCTACAACCACAAATATGAGAACGACCTGGCACTGCTTAAG
Seq C2 exon
CTAGATAGACGAGTGCAGCCCAGCAAGAATGTCAAACCACTAGCTCTGCCAAGAAAGCCCCGATCCAAGCCGGCAGAAGGTACCTGGTGCAGCACAGCTGGCTGGGGAATGACCCACCAGGGTGGGCCCCGGGCCAGGGCCCTGCAGGAGTTGGATCTGCGTGTGCTGGATACCCAAATGTGTAACAACAGCCGCTTCTGGAACGGTGTCCTCATAGACAGCATGCTATGCTTAAAGGCTGGGAGCAAGAGCCAAGCCCCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054206-'2-4,'2-3,6-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.112
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=83.3)
A:
PF0008921=Trypsin=FE(20.4=100)
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCTTGTGCATCGGAAG
R:
TCCAGAAGCGGCTGTTGTTAC
Band lengths:
258-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types