BtaEX0016625 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002100 | GZMM
Description
granzyme M (lymphocyte met-ase 1) [Source:HGNC Symbol;Acc:HGNC:4712]
Coordinates
chr7:44801403-44802869:+
Coord C1 exon
chr7:44801403-44801565
Coord A exon
chr7:44802310-44802445
Coord C2 exon
chr7:44802606-44802869
Length
136 bp
Sequences
Splice sites
3' ss Seq
CCCAACCCTGCCGCCCCCAGGAC
3' ss Score
8.9
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
GAGGCAACACCTTCGAGACCCACATCATCGGGGGTCGAGACGCTGTCCCCCACTCACGCCCATACATGGTCTCGCTGCAGAAGTCGTCTGGCTCACACCAATGTGGTGGGGTGCTCCTGCACCAAAATTGGGTGTTGACAGCTGCCCACTGCCTGACCCAGCC
Seq A exon
GACGCAGCAGCTGAGGCTTGTGCTGGGGCTTCATGTGCTGGGAGAGATCAGCCCTATCTACCGCATCAGGAAGGTGGTCCGGCACCCCGAATACAAGCCAGTCCCTCATCTGGAGAATGACCTCGCACTGCTAAAG
Seq C2 exon
CTGGACGGGAAGGTGAAGCCCAGCAGGACCATCCAGCCCCTGGCGTTGCCCCGAGGGCGCCAGATGGTGGCCACAGGCACCCGGTGCAGCCTGGCCGGCTGGGGCCTGACCCACCAGCCTGGGAACCTGGCCAGGGTGCTGCAGGAGCTGGACGTGCATGTGTTGGACACCAGGATGTGCAACAACAGTCGGTTCTGGCACGGCAACATCAGCTCCCACATGATCTGCCTGGCAGCTGACTCCAAGAACCAGGCCCCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002100_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.5=83.6)
A:
PF0008921=Trypsin=FE(20.1=100)
C2:
PF0008921=Trypsin=FE(38.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCTGCACCAAAATTGGG
R:
CCGACTGTTGTTGCACATCCT
Band lengths:
244-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development