RnoEX6030669 @ rn6
Exon Skipping
Gene
ENSRNOG00000030530 | Gzmm
Description
granzyme M [Source:RGD Symbol;Acc:620022]
Coordinates
chr7:12894096-12895591:-
Coord C1 exon
chr7:12895432-12895591
Coord A exon
chr7:12894458-12894596
Coord C2 exon
chr7:12894096-12894362
Length
139 bp
Sequences
Splice sites
3' ss Seq
GAGCAAGGTTTGCATTGCAGGCT
3' ss Score
3.16
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
TAGGCAACAGATTTGAGGCCCAGATCATTGGGGGTCGAGAGGCAGTCCCGCACTCCCGCCCATACATGGTCTCGCTACAGAATACCAAGTCCCACGTGTGTGGGGGAGTCCTCGTGCATCAGAAGTGGGTGTTGACCGCTGCCCACTGCCTGTCTGAACC
Seq A exon
GCTACAGCAGCTGAAGCTGGTGTTCGGCCTGCACAGCCTTCATGATCCCCAAGATCCTGGCCTTACCTTCTACATCAAGCAAGCCATTAAACACCCTGGCTACAACCTCAAATACGAGAACGACCTGGCCCTGCTTAAG
Seq C2 exon
CTGGATGGACGGGTGAAGCCCAGCAAGAATGTCAAACCACTGGCTCTGCCAAGAAAGCCCCGAGACAAGCCTGCAGAAGGCTCCCGGTGTAGCACGGCTGGATGGGGTATAACCCACCAGAGGGGACAGCTAGCCAAGTCCCTGCAGGAGCTCGACCTGCGTCTTCTGGACACCCGGATGTGTAACAACAGCCGCTTCTGGAACGGTGTCCTCACGGACAGCATGCTGTGCTTAAAGGCTGGGGCCAAGGGCCAAGCTCCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030530-'3-5,'3-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.213
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=83.3)
A:
PF0008921=Trypsin=FE(20.4=100)
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCGTGCATCAGAAGTGG
R:
GCTGTTGTTACACATCCGGGT
Band lengths:
245-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]