GgaEX7011392 @ galGal4
Exon Skipping
Gene
ENSGALG00000015192 | GZMM
Description
granzyme M (lymphocyte met-ase 1) [Source:HGNC Symbol;Acc:HGNC:4712]
Coordinates
chr28:3114780-3115852:-
Coord C1 exon
chr28:3115500-3115852
Coord A exon
chr28:3115220-3115364
Coord C2 exon
chr28:3114780-3115028
Length
145 bp
Sequences
Splice sites
3' ss Seq
ACGTGCGCCGTGTCCCGCAGTGC
3' ss Score
8.18
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GGGACCAGCATGGAGAGGAGCGCAGTTCTGGGGCTGCTGCTGCTGCTGGCGCTGCCCAACCCTGGGCTGGGTGAGCACTGCAGTGGGGCCGGGGTGGACGATGGGGCCTCCGTGGCACCGCAGGGAGCAGCAGAGCGCGGGGGCAGCCATCCCCGCTCCTCAGCGGTGGCCGTGGGATGGGCTGCCCCCCCCCTGGCAGCGCAGTCCCATCTGCGCATCATCGGGGGACACGAGGCCAAGCCCCACTCCCGGCCCTACATGGTGTCGGTGCAGTCCAAGGGGGTGCACACCTGCGGGGGGGCACTGCTGAACCCACGCTGGGTGCTGACGGCTGCACACTGCATCCCAGAGAG
Seq A exon
TGCCGATGTCTCCAGGATGATGGTGGTGGTGGGGCTGCACCGACTGCAGGAGCGCAGGAACGCCCAGAGCTTCGCCATCCGCTCTGCCTGTCCCCATCCCGGCTACGACAGCCAGACGATGGAGGACGACCTCCTTCTGCTGCAG
Seq C2 exon
CTGGAGGGGAAGGTGAAGCGCAGCAAAAGGCAGCGACCCATCGCGCTGCTGCGGCGGGAGCCGGCGGTGGGCACCGTGTGCAGCCTGGCGGGCTGGGGCGGGCGGAGGGGGCTGAAGGCCGCCCTGCAGGAGCTGGAGGTGGCCGTGCTGGACACGAGGATGTGCAACAACAGCCGCTTCTGGAACGGCGACCTCACACCCAGCATGATCTGCTTCGAGGGCCGCGGCCGCGGCGAAGCGCCCACCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015192-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.000 C2=0.169
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.3=39.1)
A:
PF0008921=Trypsin=FE(21.6=100)
C2:
PF0008921=Trypsin=FE(36.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACTGCATCCCAGAGAG
R:
GGCCCTCGAAGCAGATCATG
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]