MmuALTD0006410-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000015443 | Gzmn
Description
granzyme N [Source:MGI Symbol;Acc:MGI:2675494]
Coordinates
chr14:56784634-56785873:-
Coord C1 exon
chr14:56785613-56785873
Coord A exon
chr14:56785579-56785612
Coord C2 exon
chr14:56784634-56784884
Length
34 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
CTTCCTTTCTCTGCCCACAGGGT
3' ss Score
13.42
Exon sequences
Seq C1 exon
CTGGAGAGTAAGGCCAAGGGGACTAGAGATGTGAGGCCCCTCAAGTTGCCTGGGCCCAAAGACAAGGTGAATCCAGGGGATGTGTGCAGTGTGGCTGGCTGGGGGAAAACGTCCATCAATACCACTGAAGGATCTGCTCTCTTAGAAGAGGCTGAATTGATCATCCAGGAGAACAAGGAATGCAAAAAACAATTCCGTCACTATTCCAAAATCACAGAGATTTGTGCTGGAGACCCAAACAAAATAGAGGCTCCGTCCAAG
Seq A exon
GTGGGGATCAAGCAATTCACAGACAAAATCCAGG
Seq C2 exon
GGTGACTCGGGGGGACCCCTCGTGTGTAACAACAAAGCTCATGGAGTTTTGTCTTATGTGAAATCCAAGAAGATCTCTTCAGGAGTCTTCACTAAGGTTGTGCACTTCCTGCCGTGGATAAGCACAAACATGAAGCTGCTCTAACAGGAGTTAAACCACCCGTGCCTTACCAGCCTGTCCGCCCTCAGGCAAGAACCACGTGGAGTGGGCAGCAAAGAATGAAAATTCACAATAAATAACCTCCAGAGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015443-5-4,6-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(17.6=81.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGAGAACAAGGAATGCA
R:
TTACACACGAGGGGTCCCC
Band lengths:
127-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: