MmuALTD0006410-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000015443 | Gzmn
Description
granzyme N [Source:MGI Symbol;Acc:MGI:2675494]
Coordinates
chr14:56784634-56785873:-
Coord C1 exon
chr14:56785613-56785873
Coord A exon
NA
Coord C2 exon
chr14:56784634-56784884
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CTTCCTTTCTCTGCCCACAGGGT
3' ss Score
13.42
Exon sequences
Seq C1 exon
CTGGAGAGTAAGGCCAAGGGGACTAGAGATGTGAGGCCCCTCAAGTTGCCTGGGCCCAAAGACAAGGTGAATCCAGGGGATGTGTGCAGTGTGGCTGGCTGGGGGAAAACGTCCATCAATACCACTGAAGGATCTGCTCTCTTAGAAGAGGCTGAATTGATCATCCAGGAGAACAAGGAATGCAAAAAACAATTCCGTCACTATTCCAAAATCACAGAGATTTGTGCTGGAGACCCAAACAAAATAGAGGCTCCGTCCAAG
Seq A exon
NA
Seq C2 exon
GGTGACTCGGGGGGACCCCTCGTGTGTAACAACAAAGCTCATGGAGTTTTGTCTTATGTGAAATCCAAGAAGATCTCTTCAGGAGTCTTCACTAAGGTTGTGCACTTCCTGCCGTGGATAAGCACAAACATGAAGCTGCTCTAACAGGAGTTAAACCACCCGTGCCTTACCAGCCTGTCCGCCCTCAGGCAAGAACCACGTGGAGTGGGCAGCAAAGAATGAAAATTCACAATAAATAACCTCCAGAGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015443-5-4,6-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(17.6=81.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGAGAACAAGGAATGCA
R:
TTACACACGAGGGGTCCCC
Band lengths:
127-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: