MmuALTD0006410-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000015443 | Gzmn
Description
granzyme N [Source:MGI Symbol;Acc:MGI:2675494]
Coordinates
chr14:56165797-56166819:-
Coord C1 exon
chr14:56166776-56166819
Coord A exon
NA
Coord C2 exon
chr14:56165797-56166047
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CTTCCTTTCTCTGCCCACAGGGT
3' ss Score
13.42
Exon sequences
Seq C1 exon
AGATTTGTGCTGGAGACCCAAACAAAATAGAGGCTCCGTCCAAG
Seq A exon
NA
Seq C2 exon
GGTGACTCGGGGGGACCCCTCGTGTGTAACAACAAAGCTCATGGAGTTTTGTCTTATGTGAAATCCAAGAAGATCTCTTCAGGAGTCTTCACTAAGGTTGTGCACTTCCTGCCGTGGATAAGCACAAACATGAAGCTGCTCTAACAGGAGTTAAACCACCCGTGCCTTACCAGCCTGTCCGCCCTCAGGCAAGAACCACGTGGAGTGGGCAGCAAAGAATGAAAATTCACAATAAATAACCTCCAGAGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015443-6-11,7-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(17.6=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAATAGAGGCTCCGTCCA
R:
TGCACAACCTTAGTGAAGACTCC
Band lengths:
127-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types