RnoALTD0013309-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000029860 | Gzmn
Description
granzyme N [Source:RGD Symbol;Acc:1597226]
Coordinates
chr15:35150851-35151754:-
Coord C1 exon
chr15:35151689-35151754
Coord A exon
chr15:35151494-35151688
Coord C2 exon
chr15:35150851-35151103
Length
195 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CGTCCTTTCTCCATCCACAGGGT
3' ss Score
12.19
Exon sequences
Seq C1 exon
TTGGAGAGTAAGGCCAAGAGGACTAAAGCTGTGAGGACCCTCAGGTTGCCTGGGCGCAAAGACCAC
Seq A exon
GTAAATCCAGGGGATGTTTGTGGTGTGGCTGGCTGGGGAAAAACATCCATCAATGCCAATAAAGGATCTGCCCTGTTAGAGGAGGCTGAACTGATCATCCAGGGGGACGCGGAATGCAAAAAACGCTTCCGTCACTATTCCGAAACCACAGAGATTTGTGCTGGAGACCCAAACGAAATAGAGGCTCCTTCCAAG
Seq C2 exon
GGTGACTCGGGGGCACCCCTTGTGTGTGACAACAAAGCTTATGGAGTTTTGTCCTATGTAAAATCCAAGAAGATTTCTTCAGGGGTCTTCACCAAGGTTGTGTACTTCCTGCCGTGGATAAGCCAAAACACGGAGCTCCTCTAACAGGTTAACACCTGTGCCCAACCAGCCTGTCTGACCTCAGGCAAGAACCCCAATGAGTGTGCGTCAAAGGCTGAAAATCCATAATAAATAACCCCCAATGTGCAAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029860-4-5,5-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(17.6=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTAAAGCTGTGAGGACCC
R:
CGCACACTCATTGGGGTTCTT
Band lengths:
254-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]