MmuALTD0007372-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000029475 | Kdm2b
Description
lysine (K)-specific demethylase 2B [Source:MGI Symbol;Acc:MGI:1354737]
Coordinates
chr5:122921385-122922107:-
Coord C1 exon
chr5:122922002-122922107
Coord A exon
chr5:122921978-122922001
Coord C2 exon
chr5:122921385-122921471
Length
24 bp
Sequences
Splice sites
5' ss Seq
AAAGTGTGT
5' ss Score
2.99
3' ss Seq
GATCCTTTGTTTGGCCACAGAAT
3' ss Score
8.05
Exon sequences
Seq C1 exon
GTGTTTTTCATTTAGAGATTCTGTCCCAAAGGACTGAGGTGGAGAGAGAGAGTGGAGGTTACCCAGTGCCCTCCTCTGACTTCCGAGTTCTCTGAGGACAGGATAC
Seq A exon
GTGAGCATACGCTACAGATAGAAA
Seq C2 exon
AATGTACTGAAAGAGCACGTGGATGACGACCCCACCCTGGCCATCACCGGGGTCCCTGTGGTCAGCTGGCCAAAGAAAACTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029475-39-29,40-29,41-29,42-29-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.276
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAGGACTGAGGTGGAGA
R:
CGTCATCCACGTGCTCTTTCA
Band lengths:
110-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types