MmuALTD0007885-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000040249 | Lrp1
Description
low density lipoprotein receptor-related protein 1 [Source:MGI Symbol;Acc:MGI:96828]
Coordinates
chr10:127545731-127546138:-
Coord C1 exon
chr10:127546000-127546138
Coord A exon
NA
Coord C2 exon
chr10:127545731-127545865
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGA
5' ss Score
7.45
3' ss Seq
CCACCATCTGTCCTCCACAGACC
3' ss Score
11.17
Exon sequences
Seq C1 exon
CCCCCCACGGCCCAGAACCCCCACTGCAAAGACAAGAAGGAGTTCCTGTGCCGAAACCAGCGCTGTCTATCATCCTCCCTGCGCTGTAACATGTTCGATGACTGCGGCGATGGCTCCGATGAAGAAGATTGCAGCATCG
Seq A exon
NA
Seq C2 exon
ACCCCAAGCTGACCAGCTGTGCCACCAATGCCAGCATGTGTGGGGACGAAGCTCGTTGTGTGCGCACTGAGAAAGCTGCCTACTGTGCCTGCCGCTCGGGCTTCCATACTGTGCCGGGCCAGCCCGGATGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040249-134-120,135-120-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=79.2)
A:
NA
C2:
PF126622=cEGF=PU(82.6=41.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGGCTCCGATGAAGAAG
R:
GGCACAGTAGGCAGCTTTCTC
Band lengths:
122-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types