MmuALTD0007885-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000040249 | Lrp1
Description
low density lipoprotein receptor-related protein 1 [Source:MGI Symbol;Acc:MGI:96828]
Coordinates
chr10:126982787-126983196:-
Coord C1 exon
chr10:126983056-126983196
Coord A exon
NA
Coord C2 exon
chr10:126982787-126982921
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGA
5' ss Score
7.45
3' ss Seq
CCACCATCTGTCCTCCACAGACC
3' ss Score
11.17
Exon sequences
Seq C1 exon
AGCCCCCCACGGCCCAGAACCCCCACTGCAAAGACAAGAAGGAGTTCCTGTGCCGAAACCAGCGCTGTCTATCATCCTCCCTGCGCTGTAACATGTTCGATGACTGCGGCGATGGCTCCGATGAAGAAGATTGCAGCATCG
Seq A exon
NA
Seq C2 exon
ACCCCAAGCTGACCAGCTGTGCCACCAATGCCAGCATGTGTGGGGACGAAGCTCGTTGTGTGCGCACTGAGAAAGCTGCCTACTGTGCCTGCCGCTCGGGCTTCCATACTGTGCCGGGCCAGCCCGGATGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040249-85-81,86-81-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=79.2)
A:
NA
C2:
PF126622=cEGF=PU(82.6=41.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGGCTCCGATGAAGAAG
R:
GGCACAGTAGGCAGCTTTCTC
Band lengths:
122-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: