MmuALTD0008277-4/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036109 | Mbnl3
Description
muscleblind-like 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444912]
Coordinates
chrX:51164418-51205832:-
Coord C1 exon
chrX:51205774-51205832
Coord A exon
chrX:51205562-51205773
Coord C2 exon
chrX:51164418-51164664
Length
212 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGA
5' ss Score
4.23
3' ss Seq
TTTGGTTCTGATTTCTTTAGATT
3' ss Score
8.52
Exon sequences
Seq C1 exon
GAGTTCCTGCGCGTGGCGTCCTCGCAGCGAGACGCCGCTGGAGTCGCTCACTCGGAGAG
Seq A exon
GTGAGGCTGGACGGTGGCGGGGGCGGTGGCCGTGGCAGTGGCGGCGAGGGGCGACGGCTAGGCGGGGTGAGTGGCGCTACCTGGCCAGGCGGGGCGGGGCCGGTCCGGGGCGGCTGAGGGCGGCGATTGCCGGCGACTCCAGGAGTTTGGCGTGAGTTGCCTTGCGGGCGCCTAAAATCCGAATTGTCTCTCCCGAATGGCCGAGCGCTAAA
Seq C2 exon
ATTCCTTGAACCATCTGCAGTCATATTATTCTCTGAAGAGGGTGCACTTGATTGCCAATTTGCTCTCAGTATGACACCTGTCAATGTAGCTCTAATCCGTGATACCAAGTGGCTGACTTTAGAAGTCTGTAGAGAATTTCAGAGAGGAACTTGCTCTCGAGCTGATGCAGAGTGCAGGTTTGCCCATCCGCCAAGAGTTTGCCATGTGGAAAATGGCCGAGTGGTGGCCTGTTTTGATTCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036109-1-8,2-8,3-8,4-8-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.131
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0064219=zf-CCCH=WD(100=42.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTGGAGTCGCTCACT
R:
AGTGAATCAAAACAGGCCACCA
Band lengths:
268-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types