MmuEX0028108 @ mm10
Exon Skipping
Gene
ENSMUSG00000036109 | Mbnl3
Description
muscleblind-like 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444912]
Coordinates
chrX:51139204-51205990:-
Coord C1 exon
chrX:51205774-51205990
Coord A exon
chrX:51164418-51164664
Coord C2 exon
chrX:51139204-51139368
Length
247 bp
Sequences
Splice sites
3' ss Seq
TTTGGTTCTGATTTCTTTAGATT
3' ss Score
8.52
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTTCACGACGCAAGTGCGTCCTACAGGAAGAAAGTGCCCCCAGTCGGAGCGCGAGCAGGAGCGCGACTTTTTGGCGCTCTTTGCGAGCGAGCCGCAAGGAGGCGGAAGACGGTCCCGGGCCGGGGCGCGGGAATCGGGGCAGCGAGCGCCGCACGGGGGAGTTCCTGCGCGTGGCGTCCTCGCAGCGAGACGCCGCTGGAGTCGCTCACTCGGAGAG
Seq A exon
ATTCCTTGAACCATCTGCAGTCATATTATTCTCTGAAGAGGGTGCACTTGATTGCCAATTTGCTCTCAGTATGACACCTGTCAATGTAGCTCTAATCCGTGATACCAAGTGGCTGACTTTAGAAGTCTGTAGAGAATTTCAGAGAGGAACTTGCTCTCGAGCTGATGCAGAGTGCAGGTTTGCCCATCCGCCAAGAGTTTGCCATGTGGAAAATGGCCGAGTGGTGGCCTGTTTTGATTCACTAAAG
Seq C2 exon
GGTCGGTGCACTCGTGAGAACTGCAAGTACCTCCACCCTCCACCGCACTTAAAGTCGCAGCTAGAAGTTAATGGGAGAAACAATCTGATTCAACAGAAGACTGCCGCAGCCATGTTCGCCCAGCACATGCAACTCATGCTGCAGAACGCTCAGATGTCATCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036109_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (disopred):
C1=NA A=0.131 C2=0.368
Domain overlap (PFAM):
C1:
NA
A:
PF0064219=zf-CCCH=WD(100=42.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGGAAGAAAGTGCCCCCA
R:
CTGCGGCAGTCTTCTGTTGAA
Band lengths:
305-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types