MmuEX0028108 @ mm9
Exon Skipping
Gene
ENSMUSG00000036109 | Mbnl3
Description
muscleblind-like 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444912]
Coordinates
chrX:48492381-48559009:-
Coord C1 exon
chrX:48558951-48559009
Coord A exon
chrX:48517595-48517841
Coord C2 exon
chrX:48492381-48492545
Length
247 bp
Sequences
Splice sites
3' ss Seq
TTTGGTTCTGATTTCTTTAGATT
3' ss Score
8.52
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAGTTCCTGCGCGTGGCGTCCTCGCAGCGAGACGCCGCTGGAGTCGCTCACTCGGAGAG
Seq A exon
ATTCCTTGAACCATCTGCAGTCATATTATTCTCTGAAGAGGGTGCACTTGATTGCCAATTTGCTCTCAGTATGACACCTGTCAATGTAGCTCTAATCCGTGATACCAAGTGGCTGACTTTAGAAGTCTGTAGAGAATTTCAGAGAGGAACTTGCTCTCGAGCTGATGCAGAGTGCAGGTTTGCCCATCCGCCAAGAGTTTGCCATGTGGAAAATGGCCGAGTGGTGGCCTGTTTTGATTCACTAAAG
Seq C2 exon
GGTCGGTGCACTCGTGAGAACTGCAAGTACCTCCACCCTCCACCGCACTTAAAGTCGCAGCTAGAAGTTAATGGGAGAAACAATCTGATTCAACAGAAGACTGCCGCAGCCATGTTCGCCCAGCACATGCAACTCATGCTGCAGAACGCTCAGATGTCATCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036109-'1-7,'1-2,7-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (disopred):
C1=NA A=0.186 C2=0.736
Domain overlap (PFAM):
C1:
NA
A:
PF0064219=zf-CCCH=WD(100=42.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTGGAGTCGCTCACT
R:
GAGATGACATCTGAGCGTTCTGC
Band lengths:
188-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types