Special

MmuALTD0008614-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000038437 | Mllt6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:MGI Symbol;Acc:MGI:1935145]
Coordinates
chr11:97533771-97535385:+
Coord C1 exon
chr11:97533771-97533906
Coord A exon
chr11:97533907-97533996
Coord C2 exon
chr11:97534774-97535385
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AAGCCCCTCCTTTGCTGCAGGCT
3' ss Score
6.46
Exon sequences
Seq C1 exon
GTCTCCTCAGCGACTTCTTCCTCCCACCATGAGGCCAGCACTCAGGAGACCTCTGAGAGTAGCAGGGACTCAAAGGGGAGAAAGTCTTCCAGCCATAGCCTGAGTCATAAGGACAAGAAACTGGGCACTGGGAAAG
Seq A exon
GTGTGAGCAGTTTCACCTCCGCTTCCTCCTCTTCCTCCTCCTCTTCCTCTTCCTCCTCTTCCTCCTCTGGGGGCCCTTTTCAGCCTGCAG
Seq C2 exon
GCTCGTCTCTGCAGAGCTCTCCTGACTTTGCAGCGTTCCCCAAGCTGGAACAGCCGGAGGAAGACAAATATCCCAAGCCTGCGGACCCCACCCCGCCGGCCCCTCCCTCGCCCACGGCCCCTGAGCCCCCAAAGGCTGACCTCTTTGAACAGAAAGTTGTCTTCTCTGGCTTTGGGCCCATCATGCGCTTCACCACCACCGCCTCCAGCTCCAGCCGGGCCCGAGCCCCTTCACCTGGAGACTATAAGTCTCCCCATATTACCGGGGCCGGGGCCTCAGCAGGCACCCACAAACGGATGCCCGCACTGAGTGCCACCCTTGGACCTGCTGAGGAGGCCCCTGAGACCACCCTGAAGGAGAAGAAACACAAAGCCAGCAAAAGGAGCCGACACGGGCCAGGCCGACCCAAAGGGAGCAGAGGCAAGGAGGGTGCTTCAGGCCCGACTGCCTCCCTCCCTGCGGCTCAGCTCGCTGGCTTCACTGCCACTGCGGCCTCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038437-17-15,18-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=NA C2=0.739
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000103212





     
                   









    
Main Skipping Isoform:
ENSMUSP00000045445





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr17:36872082-36872083 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr19:39948137-39948356 
HIGH PSI
BtaALTD0013477-2/2
(MLLT6)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr27:3900426-3900427 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCCTCAGCGACTTCTTCCTCC

				
R: 
AACGCTGCAAAGTCAGGAGAG

				
Band lengths: 
170-260

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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