MmuINT0099406 @ mm9
Intron Retention
Gene
ENSMUSG00000038437 | Mllt6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:MGI Symbol;Acc:MGI:1935145]
Coordinates
chr11:97533771-97535385:+
Coord C1 exon
chr11:97533771-97533906
Coord A exon
chr11:97533907-97534773
Coord C2 exon
chr11:97534774-97535385
Length
867 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
3' ss Seq
AAGCCCCTCCTTTGCTGCAGGCT
3' ss Score
6.46
Exon sequences
Seq C1 exon
GTCTCCTCAGCGACTTCTTCCTCCCACCATGAGGCCAGCACTCAGGAGACCTCTGAGAGTAGCAGGGACTCAAAGGGGAGAAAGTCTTCCAGCCATAGCCTGAGTCATAAGGACAAGAAACTGGGCACTGGGAAAG
Seq A exon
GTGTGAGCAGTTTCACCTCCGCTTCCTCCTCTTCCTCCTCCTCTTCCTCTTCCTCCTCTTCCTCCTCTGGGGGCCCTTTTCAGCCTGCAGGTGAGTACGGGTGTCCTAGAGGAGGCAGAGAGCGGGAGCCCCTTGACCCGTGCCGTGTGGCAAGGGTCTGTGCCTGGTGGTTTCCCGACATCTCTCCTTTGTTTTTTTTATAAGTGCTGTGGGGGTGACAAGGCAGGGAACCCCTCCCCCAGCTGGATTCTCCACCCTCTTTTAGATTTATTTATATATCATATGGGTGCTTTGTCTGCACAGCAGAAGAGGGAATCAGACCCTGTTATAGGTGGTTGTGTTGGAACCCGTTACTGATGGCTGTGGGCCGGAACGTGAGTTCTAGGAATTGATCGGAAGCCCTGTGGAAGGGCAGCCAGTGCTGTTTTACACTGTTGCACTGTTTACACTGTTGCCCAGCCCCCCCCCCCCAAACCAGAGCCCCTTTCCTTACAAGGCCCATTCTCTAACCCCACAATAGTGTCCCCTACCTTTGTGTCAAAAGGGCCATCTGAAAACACCAAAATTAGTTCCAGGCCCAGCGGCCCGTAATCCCAACATTTGGGAGCTGCAGAATTGGCTGAATTTGAGGCCAGCCTCTACTAACGCCGGAGAACCTGTCCCAGTCAGTGCTCAAGAAGCAGGAATTTGCTCAGTTTGCTCAAGGGTGGGAGTTCCCAGCAGGGACTGTCATCCTAGGACAAAGGCAGGTGGAGCTGTCTGGGACACCAGCTACGGTTCCTAACTAGGGTCTGCGGTTCCTAACTAGGGTCTGCGCTGGGGGAAGGAGGGAGGTGGTCCAGCAGTAAAGCCCCTCCTTTGCTGCAG
Seq C2 exon
GCTCGTCTCTGCAGAGCTCTCCTGACTTTGCAGCGTTCCCCAAGCTGGAACAGCCGGAGGAAGACAAATATCCCAAGCCTGCGGACCCCACCCCGCCGGCCCCTCCCTCGCCCACGGCCCCTGAGCCCCCAAAGGCTGACCTCTTTGAACAGAAAGTTGTCTTCTCTGGCTTTGGGCCCATCATGCGCTTCACCACCACCGCCTCCAGCTCCAGCCGGGCCCGAGCCCCTTCACCTGGAGACTATAAGTCTCCCCATATTACCGGGGCCGGGGCCTCAGCAGGCACCCACAAACGGATGCCCGCACTGAGTGCCACCCTTGGACCTGCTGAGGAGGCCCCTGAGACCACCCTGAAGGAGAAGAAACACAAAGCCAGCAAAAGGAGCCGACACGGGCCAGGCCGACCCAAAGGGAGCAGAGGCAAGGAGGGTGCTTCAGGCCCGACTGCCTCCCTCCCTGCGGCTCAGCTCGCTGGCTTCACTGCCACTGCGGCCTCACCCTTCTCTGGGGGCTCCCTGGTCAGCGCTGGCCTGGGGGGTCTGGCCTCCCGTACCTTTGGGCCTTCAGGAAGCTTGCCCAGCTTGAGCTTAGAGTCATCTCTGCTGGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038437-Mllt6:NM_139311:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.739
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACTCAGGAGACCTCTGA
R:
ATAGTCTCCAGGTGAAGGGGC
Band lengths:
346-1213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: