RnoINT0092960 @ rn6
Intron Retention
Gene
ENSRNOG00000053285 | Mllt6
Description
MLLT6, PHD finger containing [Source:RGD Symbol;Acc:1306689]
Coordinates
chr10:85615061-85616658:+
Coord C1 exon
chr10:85615061-85615193
Coord A exon
chr10:85615194-85616046
Coord C2 exon
chr10:85616047-85616658
Length
853 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
3' ss Seq
AAACCCTTCCTTTGCTGCAGGTT
3' ss Score
9.25
Exon sequences
Seq C1 exon
GTCTCAGCTACGACTTCCTCCCACCATGAGGCCAGCACTCAGGAGACCTCTGAGAGCAGCAGGGACTCAAAGGGGAGAAAGTCTTCCAGCCATAGCCTGAGTCATAAGGGCAAGAAACTGGGCAGTGGGAAAG
Seq A exon
GTGTGAGCAGTTTTACCTCCGCCTCCTCCTCCTCCTCCTCTTCCTCCTCTTCTTCCTCCTCTGGGGGCCCCTTTCAGCCTGCAGGTGAGTATGGGTGTCCTAGAGGAGGCCGAGAGCAGGAGCCCCTGACCTGTGCTGCTGTAGCAAGGGGCTGTGCCTGGTGTTTTCCGAACATCACTCCTTTGTTCTTACAAACTGATGTGGGGTGATACAGCAGGGAACACCCCCAAGCTGGATTCTCCAGTCTCTTAAAGATTTTATTTATCTTATGTGGGTGTTTTGTGTGCACACCAGACCCTGTTCTAGATTGGTTGTATTGGAACCCATTACAGATGGTTACGGGCCACCATGCGAGTGCTAGGAATTGATCTTAGGACCTGTGGAAGGGCAGCCAGTGCTGTTTTAACTTTTGCACTGTCTCTCTAACCCCCCACTCCTTTCCCTCTTAAAGCAAAGTTCCCTTTCCTTGCTGGGCCCATCCCTCTAACTGCACAGTAGGGTTCCCTACTTTTGTATCAAAAGGGCCATTTGAAAGCACCAATATTAGAACCAGGTACAGAGGCTGGTAATCCCGGCATTTGGGAGCTGCAGAAGTGTCTGAGTTTGAGGCCAGCCTGTCCTAATGCATGAGAATCAGCCCCCACCCCCCATCAGTGCTAAAGTAACAACAATCTGCTCAGTTTGGTCAAGGCTAGGAGTTGCTTTTCTCCAGTTTTGTTTCCAGCAGAGACTGTCATCCTAGGACAAAGCAGGTAGAGCTGGCTGGGACACCAGGCTGCATTTCCTACCTAGGGTCTCATGCTGGTGGGGAAGGAGGGGGTGGTCCAGCAGTAAAACCCTTCCTTTGCTGCAG
Seq C2 exon
GTTCATCTCTGCAGAGCTCTCCTGACTTTGCAGCCTTCCCCAAGCTGGAGCAGCCAGAGGACGACAAGTACTCCAAGCCTCCAGCTCCCACTCCGCCAGCCCCTCCGTCGCCCACCATCCCTGAGCCCCCGAAGGCTGACCTCTTCGAACAGAAAGTGGTCTTCTCTGGCTTTGGGCCCATCATGCGCTTCACCACCACCACCTCCAGCTCCAGCCGGGCCCGAGCCCCCTCCCCTGGAGACTATAAGTCTCCCCATGTTTCAGGGTCCGGGACCTCAGCAGGCTCCCATAAACGGATGCCTGCACTGAGTGCCACGCTTGGACCTGCTGAGGAGGCCCCCGAGACGACTCTGAAGGAGAAGAAACACAAAGCCAGCAAGAGGAGCCGACATGGGCCAGGCCGACCCAAGGGTAGCCGAGGCAAGGAGGGCGCTACAGGCCCGACCGCCTCCCTCCCTGCCGCTCAGTTGGCTGGCTTTACTGCCACTGCGGCCTCACCCTTCTCTGGGGGTTCTCTGGTCAGCTCCGGCCTGGGTGGCCTGGCTCCCCGTACCTTTGGGCCTTCAGGAAGCTTGCCCAGTTTGAGCCTGGAGTCCCCCCTGCTGGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053285:ENSRNOT00000092122:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.834
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGCCATAGCCTGAGTCA
R:
AGTGCAGGCATCCGTTTATGG
Band lengths:
357-1210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]