MmuINT0099406 @ mm10
Intron Retention
Gene
ENSMUSG00000038437 | Mllt6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:MGI Symbol;Acc:MGI:1935145]
Coordinates
chr11:97672457-97674071:+
Coord C1 exon
chr11:97672457-97672592
Coord A exon
chr11:97672593-97673459
Coord C2 exon
chr11:97673460-97674071
Length
867 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
3' ss Seq
AAGCCCCTCCTTTGCTGCAGGCT
3' ss Score
6.46
Exon sequences
Seq C1 exon
GTCTCCTCAGCGACTTCTTCCTCCCACCATGAGGCCAGCACTCAGGAGACCTCTGAGAGTAGCAGGGACTCAAAGGGGAGAAAGTCTTCCAGCCATAGCCTGAGTCATAAGGACAAGAAACTGGGCACTGGGAAAG
Seq A exon
GTGTGAGCAGTTTCACCTCCGCTTCCTCCTCTTCCTCCTCCTCTTCCTCTTCCTCCTCTTCCTCCTCTGGGGGCCCTTTTCAGCCTGCAGGTGAGTACGGGTGTCCTAGAGGAGGCAGAGAGCGGGAGCCCCTTGACCCGTGCCGTGTGGCAAGGGTCTGTGCCTGGTGGTTTCCCGACATCTCTCCTTTGTTTTTTTTATAAGTGCTGTGGGGGTGACAAGGCAGGGAACCCCTCCCCCAGCTGGATTCTCCACCCTCTTTTAGATTTATTTATATATCATATGGGTGCTTTGTCTGCACAGCAGAAGAGGGAATCAGACCCTGTTATAGGTGGTTGTGTTGGAACCCGTTACTGATGGCTGTGGGCCGGAACGTGAGTTCTAGGAATTGATCGGAAGCCCTGTGGAAGGGCAGCCAGTGCTGTTTTACACTGTTGCACTGTTTACACTGTTGCCCAGCCCCCCCCCCCCAAACCAGAGCCCCTTTCCTTACAAGGCCCATTCTCTAACCCCACAATAGTGTCCCCTACCTTTGTGTCAAAAGGGCCATCTGAAAACACCAAAATTAGTTCCAGGCCCAGCGGCCCGTAATCCCAACATTTGGGAGCTGCAGAATTGGCTGAATTTGAGGCCAGCCTCTACTAACGCCGGAGAACCTGTCCCAGTCAGTGCTCAAGAAGCAGGAATTTGCTCAGTTTGCTCAAGGGTGGGAGTTCCCAGCAGGGACTGTCATCCTAGGACAAAGGCAGGTGGAGCTGTCTGGGACACCAGCTACGGTTCCTAACTAGGGTCTGCGGTTCCTAACTAGGGTCTGCGCTGGGGGAAGGAGGGAGGTGGTCCAGCAGTAAAGCCCCTCCTTTGCTGCAG
Seq C2 exon
GCTCGTCTCTGCAGAGCTCTCCTGACTTTGCAGCGTTCCCCAAGCTGGAACAGCCGGAGGAAGACAAATATCCCAAGCCTGCGGACCCCACCCCGCCGGCCCCTCCCTCGCCCACGGCCCCTGAGCCCCCAAAGGCTGACCTCTTTGAACAGAAAGTTGTCTTCTCTGGCTTTGGGCCCATCATGCGCTTCACCACCACCGCCTCCAGCTCCAGCCGGGCCCGAGCCCCTTCACCTGGAGACTATAAGTCTCCCCATATTACCGGGGCCGGGGCCTCAGCAGGCACCCACAAACGGATGCCCGCACTGAGTGCCACCCTTGGACCTGCTGAGGAGGCCCCTGAGACCACCCTGAAGGAGAAGAAACACAAAGCCAGCAAAAGGAGCCGACACGGGCCAGGCCGACCCAAAGGGAGCAGAGGCAAGGAGGGTGCTTCAGGCCCGACTGCCTCCCTCCCTGCGGCTCAGCTCGCTGGCTTCACTGCCACTGCGGCCTCACCCTTCTCTGGGGGCTCCCTGGTCAGCGCTGGCCTGGGGGGTCTGGCCTCCCGTACCTTTGGGCCTTCAGGAAGCTTGCCCAGCTTGAGCTTAGAGTCATCTCTGCTGGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038437:ENSMUST00000044730:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.740
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACTCAGGAGACCTCTGA
R:
ATAGTCTCCAGGTGAAGGGGC
Band lengths:
346-1213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types