GgaINT1018000 @ galGal4
Intron Retention
Gene
ENSGALG00000001574 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr27:3991169-3992692:+
Coord C1 exon
chr27:3991169-3991343
Coord A exon
chr27:3991344-3992107
Coord C2 exon
chr27:3992108-3992692
Length
764 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TTCCCCTCTCCCTCCCCCAGGCA
3' ss Score
12.36
Exon sequences
Seq C1 exon
GGCTCCACCAGCCACCATGAGGGGAGCAAAGAGACCTCAGAGGTCGGCAGATCAGAGGTGAAAGGCAAGAAGTCCTCGAGCCATGGCAGCAGCCACAAGGGGAAGAAGACTGGAAGCGGGAAGAGCTCGGCTGGGTTCAGCTCAGCATCCTCCAGCAGCGCCTTCCAGCCTGCAG
Seq A exon
GTAGGGGTGAGGGTGGAGGGGGGGGGTGGCGAGTGATGGCTCGCTTTGATTCTCGTTGGTATCTCTGTTATCTATATCACCGGGGTACCAGTTCAGAGCACGTGCTTTGAAACCGGGCTGATGGCTCCTTAAGCTCTTTGAACAGGAGGGGAAAGGCCTCGTTGCCCCTTTGCTCCCTGCATGGGGGGGGTAACCGAGTCGGAGTGCTGCAGCTCCGCTCCTGCGTGCGCCTTCTGCACCGCGAGGCAAAGCAGATCCAGATGTCTGAGCAGAGGGAGGAGGAAAGGGATGCTTGCTCAGGCAATGTGGGCAGCACCTGCCTCCGCCTCCATAGGTGGGATCATCTGCAGCAGTGCTTTAAGGGGTGCTGGGGGAGAGGCCTGAGCCGCGACCTGATAGCCCAGCTGCCCTGAGCTTCGAGTCGAAACCCAACGGGGGTTCCCATCTGCTCAGATTTTTATTGAGCCGTTGCCAGAACTGCATGCAGGTTTCGTCTCCTGGGACCCTGGTTGGGGCTGGAAGAAGGGCGGTGGTGCAGGGGAGCAAACACGTGCGGGTTTGGGTGGGGTGAAGCCGCTGCTGTGCACCCCTCGTGCTATCTATAGAGCATCAGAGCAGGGCTGGAAGGTGGCAGAGGTGTCTGTTGGCTGGGTAAGCAGCCTGTGACCGAGGAGCTGCCCTGTGACCGTGCTCTCGTTGCATCGTGGGCTGAGCTATTGCCACCGCAAGCCTTCCTATGCCCGCTTCCCCTCTCCCTCCCCCAG
Seq C2 exon
GCACCTCCTGCAGCTCCTTGCAGTGCTCCCAGGATTTCGTGGCGTTCCCCAAGCTAGAGCAGGACGACGAGAAGTACCGCAAGCCCGTCTCCTCCTCTTCATCCTCCCACTGCTCCCCGCTGTACGAAGGCCAGAAGGGGGACATCTTTGAGCAGAAGGTGATCTTCTCAGGCTTCGGGTCCATCATGCGCTTCTCCACCTCCGCTGTGAGCCAGCCGAGGGGCCGCGATGCTTCCCCCGTGGACTACAAAGCCTCCAACCCCATCAGTGGCCCTTCGGCGATGGGCAGCGTTGCCAGCAGCAGCAGCCACAAGCGTATGCCATCCCTCAGCATGGAGGAGGGAGAGGTGCTGAAGGAAAAGAAGCACAAAGGCAGCAAGAAAAACAAGCACGGGCCCGGCAGGCCGAAAGGGGGCAAAAGCAAAGAGATGTTGGGTGCCCAGCTGGCTGGGTCCACGTCGACGTCCTCGTCACCGTTCTCCGGGGGTTCTCTTGTCAGCTCCAGCATCAGCAACTCTTCGCGGCCCTTCAGCCACACGGGGAACCTGCCCAGCCTCAGCATGGAGTCCCCGCTGCTGAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574:ENSGALT00000002392:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=NA C2=0.748
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGAGGGGAGCAAAGAGA
R:
ACCCGAAGCCTGAGAAGATCA
Band lengths:
342-1106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]