HsaINT0103743 @ hg38
Intron Retention
Gene
ENSG00000275023 | MLLT6
Description
MLLT6, PHD finger domain containing [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr17:38715612-38716981:+
Coord C1 exon
chr17:38715612-38715828
Coord A exon
chr17:38715829-38716366
Coord C2 exon
chr17:38716367-38716981
Length
538 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGTTTCCCCTCTGTGCACAGTCT
3' ss Score
9.24
Exon sequences
Seq C1 exon
GTCTCCTCCTCGGCTTCCTCTTCCTCCCACCACGAGGCCAGCACGCAGGAGACCTCTGAGAGCAGCAGGGAGTCAAAGGGGAAAAAGTCTTCCAGCCATAGCCTGAGTCATAAAGGGAAGAAACTGAGCAGTGGGAAAGGTGTGAGCAGTTTTACCTCCGCCTCCTCTTCTTCCTCCTCCTCTTCCTCCTCCTCTGGGGGGCCCTTCCAGCCTGCAG
Seq A exon
GTGAGTGTGGGCATCCGGGAGGAAGCTGGGAGCAGGGAAAGCCTTTTGTCCTGAGCTTTTCTGGCAAGGGACTTTGCATATTGGTTTTGCATCTCATTTACTTCTCCATTGGTTCAGGATAAAGATGGGGAATCCCCTCCTCTCCAAACCTGCCCCCAAACCCTTCCTTCTTGAACCAGAACTCTCCTCTCCCCTTCAGGGGCCACCCCACCAACCTCATAACAGTATTCCTTATCCCCTACATTTGTGCTGCAAGGTACAATTTTTCAAGAACCCCCATTAACATTTTCTCCTATAATCGCTACAGTCATCTGGTGAGGCCAGTAGGGTGCGAGTTACTCTCCCCCATTTTATTACAGGTGGGAAAGCTGGAGGGGTCGGGGGTACTCATCCCAGGACACAGACAGTGGCAGAGCTGAGACAGGAAACCAGGCATCCCCATTCGTGGACCAGAGCTCTCTCCCGCCAGTACACGCGGGAGTGGGAGGGAGTGCGGGGATCTGGGGTCCAGCTGTAACTGTTTCCCCTCTGTGCACAG
Seq C2 exon
TCTCGTCCCTGCAGAGCTCCCCTGACTTCTCTGCATTCCCCAAGCTGGAGCAGCCAGAGGAGGACAAGTACTCCAAGCCCACAGCCCCCGCCCCTTCAGCCCCTCCTTCTCCCTCAGCTCCCGAGCCCCCCAAGGCTGACCTTTTTGAGCAGAAGGTGGTCTTCTCTGGCTTTGGGCCCATCATGCGCTTCTCCACCACCACCTCCAGCTCAGGCCGGGCCCGGGCGCCCTCCCCTGGGGACTATAAGTCTCCCCACGTCACGGGGTCTGGGGCCTCGGCAGGCACCCACAAACGGATGCCCGCACTGAGTGCCACCCCTGTGCCTGCTGATGAGACCCCTGAGACAGGCCTGAAGGAGAAGAAGCACAAAGCCAGCAAGAGGAGCCGCCATGGGCCAGGCCGTCCCAAGGGCAGCCGGAACAAGGAGGGCACTGGGGGCCCAGCTGCCCCATCCTTGCCCAGTGCCCAGCTGGCTGGCTTTACCGCCACTGCTGCCTCACCCTTCTCTGGAGGTTCCCTGGTCAGCTCCGGCCTGGGAGGTCTGTCCTCCCGAACCTTTGGGCCTTCTGGGAGCTTGCCCAGCTTGAGCCTGGAGTCCCCCTTACTAGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000275023:ENST00000621332:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.869
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGTGGGAAAGGTGTGAG
R:
CCGTGACGTGGGGAGACTTAT
Band lengths:
356-894
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development